The ABVP member claimed she was assaulted outside Shri Ram College of Commerce (SRCC) during the last week's clashes.
The clashes between the two groups took place after an invite to JNU students Umar Khalid and Shehla Rashid to address a seminar on 'Culture of Protests' was withdrawn by the college following ABVP opposition.
Aman Nawaz, Secretary of DU unit of the All India Students Association (AISA), termed the complaint a "false propaganda".
Police officials said they have received the complaint.
"We have received a complaint. The girl had approached us on the day of the violence itself and her complaint was made part of the common FIR," a senior police official said.