"The interior ministry respectfully announces to all national and international media that they should not use drone cameras... As that can create problems for security institutions," the ministry said in a statement.
The statement did not specify the security concerns but the decision comes after a recent incident in which a local media company flew a drone over the presidential palace in Kabul while covering a huge anti-government protest.
US-led coalition forces have widely used drones for surveillance purposes and to carry out airstrikes against insurgent groups.
Days later the Taliban announced Haibatullah Akhundzada as their new leader, elevating a low-profile religious figure as the insurgent group steps up attacks against the Western-backed Afghan government.