There were 226 Indians aboard the Boeing 777-300, with most of them from Kerala.
While Budget carrier IndiGo said it has cancelled 11 flights to Dubai from various doemstic destinations, full service carrier Jet Airways cancelled two flights, one each from Mumbai and Delhi.
Meanwhile, Emirates, which had earlier announced setting up of a helpline for the US, UK and UAE, later operationalise one such helpline for India as well.
State-run Air India diverted nine of its Dubai-bound flights from different Indian cities to nearby airports like Sharjah and Al Maktoum International Airport.
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"We have cancelled all our 11 flights to Dubai for today due to non-availability of the runway at the Dubai International Airport," an IndiGo spokesperson said.
"Two of our flights have been affected owing to the runway closure at Dubai airport," Budget carrier SpiceJet said in a statement.
Our second flight from Amritsar which was expected to arrive at Dubai airport at 1715 hours IST has been diverted to a nearby airport (DWC Al Maktoum International Airport) due to the runaway closure in accordance with the instructions by the Dubai Airport Authorities.
Emirates, also announced the cancellation of its flights to Mumbai and Kolkata from Dubai in the wake of the accident.
"We are expecting an 8-hour network wide delay," Emirates said.