Badungar said yesterday in Patiala that he would not present himself before the Justice Ranjit Singh Commission, which has asked him to appear before the panel on October 8.
The commission has also asked Badungar to bring with him documents related to the incidents of sacrilege and the alleged pardon granted by the Akal Takht to the chief of Dera Sacha Sauda sect Gurmeet Ram Rahim Singh in a blasphemy case.
The chief minister said in a statement that Badungar, instead of cooperating with the commission, was refusing to join the investigation to cover up the sacrilege incidents.
The decision to set up the commission was aimed to ensure that those found responsible for trying to harm the communal fabric of the state were brought to book, Singh said.
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In fact, with several of these incidents reported from Gurdwaras, which were under its control and management, the SGPC should have taken on the task of probing the cases, he said.
But by "refusing" to cooperate with the panel, the SGPC showed it had no interest in protecting religious harmony, he said, adding that this amounted to "scuttling" the course of justice and denying the people the truth behind the crimes.
More than 120 incidents of desecrations of holy texts and religious places were reported in the state.