The authorities have also decided to ask Amnesty India to get itself registered under the Foreign Contribution Regulation Act (FCRA) after a preliminary inquiry found the organisation had "bypassed" laws while accepting foreign funds in the last 16 years.
The Amnesty International had in 2014 and 2015 issued statements to the media making it clear that it would not register under the FCRA, which it described as "much-abused".
The Amnesty has registered a non-profit organisation in the name of Amnesty International South Asia Foundation on May 8, 2015.
Soon after, it sought the government's permission to open a hub to look after its activities in South Asia, excluding India, and wanted to bring in foreign funds to the tune of Rs 18,61,92,688 under the prior permission category for its operations.
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During preliminary inquiry, the official said, the Home Ministry found that the NGO received Great Britain Pound (GBP) 3,52,057 (Rs 3,09,35,248) and Rs 2,23,99,226 in four separate instalments since 2000 without having registered under the FCRA.
"All NGOs whose expenses are Rs 10 lakh or more in three preceding years have to register under the FCRA. But the Amnesty has not applied for FCRA registration yet. We are going to tell them to register under the FCRA first," the official said.
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On December 19, 2000, the Amnesty India was granted permission for the first time to bring GBP 1,30,629 and again on November 14, 2003, GBP 2,21,428 under prior permission category.
The Home Ministry granted permission again to Amnesty to receive Rs 54,40,000 on July 14, 2009 and it received foreign funds of Rs 1,69,59,226 on March 28, 2012.
However, Amnesty India's applications on March 29, 2010 to allow it to receive Rs 32,72,000 and for Rs 1,69,59,226 on November 2, 2012 had been rejected by the Home Ministry. Two other such applications for receiving of Rs 2,65,76,204 and Rs 80,00,000 were also rejected by the Ministry on November 9, 2012 and March 19, 2013 respectively.
When contacted for its reaction, Amnesty International India said "We have not received any notice. When we do, we shall respond adequately".