The evidence came from strings of iron beads which were excavated in 1911 at the Gerzeh cemetery, a burial site approximately 70km south of Cairo.
Dating from 3350 to 3600 BC, thousands of years before Egypt's Iron Age, the bead analysed was originally assumed to be from a meteorite owing to its composition of nickel-rich iron.
However, this hypothesis was challenged in the 1980s when academics proposed that much of the early worldwide examples of iron use originally thought to be of meteorite-origin were actually early smelting attempts.
Researchers used a combination electron microscope and X-Ray CT scanner to demonstrate that the nickel-rich chemical composition of the bead confirms its meteorite origins.
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"This research highlights the application of modern technology to ancient materials not only to understand meteorites better but also to help us understand what ancient cultures considered these materials to be and the importance they placed upon them," Diane Johnson, who led the study, said.
"Today, we see iron first and foremost as a practical, rather dull metal. To the ancient Egyptians, however, it was a rare and beautiful material which, as it fell from the sky, surely had some magical/religious properties," Dr Joyce Tyldesley, Senior Lecturer in Egyptology at The University of Manchester said.
"They therefore used this remarkable metal to create small objects of beauty and religious significance which were so important to them that they chose to include them in their graves," said Tyldesley.