Japan and China routinely butt heads over ownership of the uninhabited East China Sea islets, as Chinese ships -- mostly coast guard vessels -- and aircraft have sometimes approached them to back up Beijing's claims and test Japan's response.
It was however the first time an apparently armed Chinese coast guard vessel had "entered the territorial waters near the Senkaku Islands", the Japan Coast Guard said.
Japan administers the uninhabited islands under that name but China also claims them and calls them the Diaoyus.
"The ship is seen carrying four pieces of equipment, two at the front and another set of two at the rear, which each seem to have something similar to a cannon," a coastguard spokeswoman had said at the time.
Also Read
The same ship entered what Tokyo considers its territorial waters, with two other Chinese coast guard vessels without such equipment, at around 9:30 am (0030 GMT) Saturday and stayed for about an hour, the Japan Coast Guard said in statements.
Relations between Japan and China hit a low after Tokyo in September 2012 moved to increase its formal control by nationalising some of the islands.
But the countries -- Asia's two biggest economies -- have taken steps over the past year to improve ties.
They issued carefully worded statements on the dispute ahead of a summit in November last year in Beijing between Chinese President Xi Jinping and Japan's Prime Minister Shinzo Abe.
The two sides acknowledged they had different views on tensions emanating from the issue but agreed on the need to keep them under control.