"We have asked the law enforcement agencies to specially resist attacks on minority communities in different parts of the country in the wake of the January 5 parliamentary election," said Chief Election Commissioner Kazi Rakibuddin Ahmad.
Ahmad issued the order during a meeting with security agencies on maintaining law and order during re-polling in eight constituencies on January 16.
The law enforcers were well prepared to prevent such attacks, he was quoted as saying by The Daily Star newspaper.
Reports said Hindus were targeted by opposition activists for backing the Awami League which swept the polls following a boycott by the BNP-led opposition alliance.
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On Tuesday, unidentified men raped two Hindu women at gun point in front of their relatives for casting their votes in Jessore, The Daily Star reported.
The government decided this week to set up special tribunals under an anti-terror law to punish the perpetrators of violence against Hindus.