Twenty-nine year old Kayes will replace opener Tamim Iqbal who will take a break due to the birth of his first child.
"We recalled Imrul because he is the best available option for us in the absence of Tamim," said selector Habibul Bashar.
The tournament will be held in the Twenty20 international format for the first time and is expected to serve as a warm-up for the ICC World Twenty20 to be held in India in March and April.
The winner of the qualifying round will join the four Test-playing countries, India, Pakistan, Sri Lanka and Bangladesh.
Bangladesh will host the event for the fifth time, with all matches being held at Dhaka's Sher-e-Bangla National Stadium.
Squad: Mashrafe Mortaza (capt), Soumya Sarkar, Imrul Kayes, Mohammad Mithun, Shakib Al Hasan, Mushfiqur Rahim, Sabbir Rahman, Mahmudullah Riyad, Nasir Hossain, Nurul Hasan, Arafat Sunny, Mustafizur Rahman, Al-Amin Hossain, Taskin Ahmed and Abu Hider.