Mohun Bagan took the lead as Yusa Katsumi scored off a penalty in the 37th minute but the home side pumped in twice in the second half to emerge winners in the first leg of the home and away tie.
Bengaluru, who had finished runners-up in the tournament last season, found their equaliser in 52nd minute as Jhingan, off a clearance from Cameron Watson's corner, shot the ball home with Shilton Paul stranded.
Mohun Bagan were awarded the penalty after their striker Sony Norde was brought down by Jhingan inside the box. Yusa stepped up to send a low shot to Aridam Bhattacharya's left and hit the net despite the keeper's slight touch.
The second half completely belonged to Bengaluru as Albert Roca's team pumped in two goals. Chances also came their way after their second goal.
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The hosts had close chances in the 62nd, 66th, 69th, 72nd, 78th 82nd and in fourth minute of the injury time.
Unlike the I-League match between the two teams on March 12, when Bengaluru had dominated the first half, Mohun Bagan displayed aggressive and dominating football today.
Bengaluru made far too many defensive mistakes, which could have allowed Mohun Bagan take further lead in the first half.
The Mohun Bagan midfield duo did an excellent job as Bikramjit Singh and Sehnaj had fortified the region and let nothing pass through them.
In the 11th minute, Mohun Bagan wasted a golden opportunity when Yusa sent a lovely pass to Jeje Lalpekhlua, who needed to just touch it but could not and Jhingan ran to clear the ball.