The House saw Congress President Sonia Gandhi leading the opposition members in raising slogans against the government and the BJP member.
Disapproving of the disruption, Speaker Sumitra Mahajan sarcastically said that from tomorrow she will set aside the first five minutes for apologies.
She asked Sakshi Maharaj to express regret.
The BJP member said he respects the Mahatma and the House and "I withdraw my remarks if those have hurt anybody's sentiments."
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Leader of Congress party Mallikarjun Kharge said the opposition will not allow the government to have its way just because it has majority.
As the din continued, Parliamentary Affairs Minister M Venkaiah Naidu said the member has already withdrawn his remarks. The government and the party "condemns" and "dissociate" themselves from such comments, he added.
The Speaker then again prodded Sakshi Maharaj, who said "I express regret before the House and the country."
A Pakistani delegation of legislators was in the Speaker's Gallery watching the proceedings.