Ava Kaka's online forms were being rejected by the online submission system as she had not appeared for the mandatory six subjects in her Class X exam.
According to her lawyer Mihir Desai, the ICSE Board had exempted the 16-year-old candidate from appearing for Hindi paper, after considering her medical condition.
Dyslexia leads to difficulty in learning to read fluently and with inaccurate comprehension despite normal intelligence.
Government pleader G W Mattos, however, said the exemption granted by ICSE was not binding on the state board.
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"Out of over one lakh students who have filled online forms, 226 students are disabled, and two are dyslexic. These students have appeared for all the six subjects," Mattos argued.
The division bench of Chief Justice Mohit Shah and Justice M S Sanklecha, however, held that Ava cannot be deprived of the online submission facility just because she took the benefit of exemption.
The court directed the principal of Ava's school -- J B Petit High School -- to verify her online forms as required by the rules, and asked the state education board to accept them.