Gen Gilbert Diendere is sheltering at the Vatican nunciature in Burkina Faso's capital, according to the person close to the Catholic clergy who spoke on condition of anonymity as he was not authorized to speak to journalists.
Negotiations are underway for Diendere to give himself up, the government said in a communique. Diendere told The Associated Press he is willing to surrender to authorities.
Diendere had yesterday called on his followers in the elite presidential guard to put down their arms.
The presidential guard arrested interim President Michel Kafando and interim Prime Minister Yacouba Isaac Zida on September 16.
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Diendere later took power, but stepped down after pressure from the West African regional bloc, Burkina Faso's military and demonstrating citizens. The transitional government was reinstalled September 23.
The government today said its forces are assessing the victims of its assault. It asked citizens to be tolerant toward former presidential guard soldiers and called for the "strengthening of reconciliation and national unity.