The move puts the force, which maintains domestic security, squarely under the command of President Xi Jinping, who is also head of the military.
The 660,000-strong force is responsible for border patrol, counter terrorism and fire-fighting, as well as maintaining domestic stability and other tasks.
It is currently under the dual leadership of the government's cabinet, the State Council, and the party's Central Military Commission.
By contrast, and unlike most countries, China's armed forces are permanently under the control of its ruling political party, the CCP, rather than the state.
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The report did not give a reason for the command structure change.
But a commentary in party mouthpiece People's Daily said it was a "major innovation" that "strengthens the party's absolute leadership over the armed forces ... and ensures the long-term peace and stability of the party and the country".
The strongest leader in a generation, Xi has sought to strengthen the party's control over all aspects of Chinese society.
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