The charge sheet was filed before District Judge I S Mehta who marked the file to the court of Special Judge V K Gupta. The matter will now be heard on November 24.
According to ED's prosecutor, the agency has also named Khaitan's wife Ritu, Chandigarh-based firm Aeromatrix and two Italian middlemen, Carlo Gerosa and Guido Haschke, as accused in the 80-page charge sheet.
Sources also said that the probe into the case is still going on and supplementary charge sheets would be filed later before the court.
Khaitan was the first person to be arrested in September this year by the ED in the chopper deal case in which the CBI is also running a parallel probe.
ED had earlier alleged in the court that Khaitan was "actively involved" in the illegal transactions relating to proceeds of crime and he was one of the beneficiaries of the entire deal.
ED is probing the case in which 70 million euros (Rs 360 crore) were allegedly paid as kickbacks.