The All India Football Federation's Club Licensing Committee - First Instance Body - took the decision after its meeting here.
Two Kolkata clubs -- United SC and Mohammedan Sporting -- and Rangdajied United of Shillong were the other three teams which failed to clear the licensing criteria. All the four clubs will be out of the I-League for at least a year.
Interestingly, all the four clubs finished at the bottom four in the 13-team I-League (2013-14) which ended last month, with Mohammedan Sporting finishing last and Churchill 11th.
Licensing is an annual process where all clubs eligible to compete based on sporting merit need to have a License under the AIFF's Indian Club Licensing system. Last year, only Pune FC met the requirements with all other clubs being given a once in a lifetime one-year exemption.
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Churchill had been one of the top club sides in the country in the last few years. They won the I-League title in 2008-09 and 2012-13 seasons and they are also the reigning Federation Cup champions. Churchill are also one of the few clubs to have played in the AFC Cup.
"These licensing criteria are on annual basis. They can come back in the 2015-16 season if they fulfil the criteria by then. But they will have to play in the I-League second division and qualify from there," Dhar said.
Bengaluru FC, Dempo SC, Pune FC, Salgaocar SC, East Bengal, Mohun Bagan, Sporting Clube de Goa, Mumbai FC, and Shillong Lajong FC were the nine clubs which passed the licensing criteria.