The work suggests that climate change could do more harm to chimpanzee populations than previously realised.
The Nigeria-Cameroon Chimpanzee (Pan troglodytes ellioti) is the most endangered of all chimpanzee subspecies in the world, with only about 6,000 individuals estimated in the wild.
While their habitats are already threatened by logging, agriculture and illegal hunting, few studies have looked at the possible effects of climate change.
"The Nigeria-Cameroon chimpanzee is perhaps the least studied of all chimpanzee subspecies," first author Paul Sesink Clee, Graduate Research Fellow at Drexel University, said.
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"We were surprised to see that the Nigeria-Cameroon chimpanzees living in the savanna-woodland habitat of central Cameroon are under the most immediate threat of climate change, and may completely lose their habitat within our lifetime," said Clee.
The research team, one of the few groups studying Nigeria-Cameroon chimpanzees in the wild, mapped their precise geographic locations using reports of sightings, evidence of activity including nests and tools, and fecal and hair samples collected for genetic analyses.
These fragile mosaics of ecosystems (or 'ecotones') are thought to be important in driving variation and diversification of species all over the world.
Researchers predicted how these habitats would change under climate change scenarios for years 2020, 2050, and 2080.
While the team predicted little change in the mountainous rainforest habitat, the ecotone habitat of the second population was predicted to decline quickly under all scenarios by the year 2020 and could disappear almost entirely under the worst case scenario by 2080.
The study was published in the journal BMC Evolutionary Biology.