Special Judge Anju Bajaj Chandna sought the CBI's response on the protest petition, filed by complainant V M Singh, and fixed it for consideration on November 3.
The court had in 2008 refused to accepted the closure report filed by the probe agency in the case and asked the CBI to further investigate the matter.
However, the CBI had again approached the court, saying the "allegations levelled against Gandhi and two others could not be substantiated".
An FIR was lodged by CBI in 2006 against Maneka Gandhi, Dr F U Siddiqui, former secretary of Maulana Azad Education Foundation (MAEF) and Dr Vijay Sharma, former Managing Trustee of Gandhi Rural Welfare Trust (GRWT).
Also Read
The FIR alleged that Gandhi, in conspiracy with Siddiqui, had sanctioned a grant of Rs 50 lakh to GRWT from MAEF in an irregular manner to construct a nursing college building at Pilibhit in Uttar Pradesh and caused undue favour to Sharma.
CBI alleged that another amount of Rs 10.40 lakh was sanctioned to GRWT by S K Verma, the then District Magistrate of Pilibhit, from Gandhi's MPLADS (Members of Parliament Local Area Development Scheme) funds for purchase of two ambulances. The fund was released to GRWT Managing Trustee Ramakant Rampal.
The agency, however, again filed a closure report, saying "during the course of further investigation, the allegations levelled against Maneka Gandhi, Dr F U Siddiqui and Dr Vijay Sharma could not be substantiated."
"It is, therefore, prayed that the closure report dated December 30, 2008, collectively read with this report, may kindly be accepted," it said.
In its closure report, CBI said the trust had purchased
"As such no financial irregularity could be pointed out in the matter of purchase of ambulances and the change in vehicle model was found to be on justified grounds," it said.
"Investigation further revealed that the DM, Pilibhit, approved purchase of two Mahindra Voyager ambulances. A cheque dated July 27, 2003 amounting to Rs 10.40 lakh was received by GRWT for purchase of Mahindra ambulances AC Euro-II.
"Since production of this model of vehicle was temporarily stopped, the company offered to sell Mahindra DI ambulance which according to the company was rugged, reliable and easily serviceable in semi-urban and rural areas," the agency said.
It said the funds released by both MAEF and the district administration of Pilibhit have been fully utilised by the GRWT for the purposes.