Charging that Delhi Police had overstepped their brief, he asked Modi to take strong action over the incident.
And, even as criticism was voiced by Congress and Left parties in the state over the matter, two key Kerala MPs vowed to raise the issue in Parliament during the Winter session.
Congress Deputy Chief Whip in Lok Sabha, KC Venugopal, and CPI(M) Deputy leader in Rajya Sabha, KN Balagopal, said they would take up the incident and raise the issue of killings in the name of consumption of beef when Parliament meets next month.
"I feel that the action by Delhi Police is highly objectionable and they have clearly overstepped their brief," the Chief Minister said.
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Detailing the incident, Chandy charged that a few unidentified persons accompanied by Delhi Police officials last evening came to Kerala House and conducted a raid on the staff canteen.
They disrupted the functioning of the canteen alleging that cooked cow meat was being served, Chandy claimed, adding that the complaint was based on "wrong information".
Kerala government has already lodged a complaint with the Delhi Police Commissioner in this regard, he said.