The Opposition party accused BJP of not taking adequate steps to effectively deal with the situation despite warnings about heavy rains, a charge rejected by the ruling party.
Congress General Secretary Madhusudhan Mistry along with other leaders met Collector Avantika Singh and handed over a memorandum seeking a judicial probe into the deluge.
In the memorandum, they alleged the flood was a "man-made disaster", as the state government was informed 72 hours in advance about the possibility of heavy showers but no steps were taken to deal with the situation.
The party also sought to link the tragedy with the bypoll to Vadodara Lok Sabha seat, saying BJP was trying to take political mileage.
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"We feel it is an intentional attempt by BJP and VMC in view of the elections scheduled on September 13. We fear that many displaced people would not be able to vote as they may have lost their documents in the flood," it said.
BJP, however, refuted the charge and hit back at Congress, saying it was not aware of the ground situation.
"This compelled the VMC to open 62 gates of the dam to release water into Vishwamitri river, which passes through the city. This resulted in a flood-like situation in some parts," claimed Patel, an MLA from Akota seat here.
Patel said despite water level in Vishwamitri crossing the danger mark, the situation was brought under control within 18 hours.