The companies hit with the Aus$2.9 billion (US$2.2 billion) bill were not named although miner Rio Tinto said late Wednesday it was required by the Australian Tax Office (ATO) to pay additional tax of Aus$447 million including interest.
The government said four of the firms were involved in e-commerce and three in the energy and resource sectors. Companies including Apple, Google and BHP Billiton were grilled at parliamentary hearings on their tax structures in 2015.
"Multinational companies are being put on notice."
Canberra has vowed to crack down on tax avoidance by multinationals, introducing new laws that included stronger protections for whistleblowers and harsher penalties for failure to meet compliance or disclosure requirements.
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The ATO was currently carrying out 71 audits in 59 global firms, with some 1,000 officers part of a taskforce investigating companies' tax arrangements, the government said.
It expects some of the seven companies issued with tax bills to settle their accounts, while others were likely to take the claims to court.
"The amended assessments do not relate to any tax avoidance schemes as confirmed by the Australian Tax Office. No penalties are payable," the Anglo-Australian firm added in a statement.
"Rio Tinto considers that its pricing is in accordance with the internationally recognised OECD (Organisation for Economic Co-operation and Development) guidelines and Australian domestic law.
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