Asking the state government to implement the recommendations of the state Human Rights Commission, Justice Dipankar Dutta directed the state to pay Rs 50,000 each to Mahapatra and Subrata Sengupta, who was the president of the housing society they live in, apart from another Rs 50,000 towards their expenditure on litigation.
The compensation would have to be paid within one month, the court directed, adding that an investigation be held into the role of two police officials of the concerned police station which had arrested Mahapatra.
A complaint had allegedly been lodged against Mahapatra and Sengupta, in whose name the IP address of the computer used for the purpose was registered, and both were arrested.
They were later granted bail by a city court.
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"It is a victory of human rights," Mahapatra said after the court order, adding "the verdict reflects the right to freedom of speech".
He said common people in the state were suffering in many ways when they raise questions of "misrule" of the Trinamool government.
It had directed the police authorities to take disciplinary action against two of its officers.
The state had declined to implement the recommendations of the WBHRC. The duo then moved a writ petition before the high court seeking implementation of the recommendations.
Mahapatra, a professor of chemistry in the prestigious Jadavpur University here, was arrested on April 14, 2012, along with Sengupta.