Special CBI Judge Vinod Kumar allowed the probe agency to quiz Anand Joshi, who was arrested yesterday from west Delhi, in its custody till May 20.
Seeking Joshi's custody, CBI argued that files relating to several NGOs had gone missing from the Home Ministry and they were recovered from his house and he was not supposed to take them away.
It contended that he was neither cooperating in the probe nor disclosing relevant facts and his custodial interrogation was required to find out how those files came to his house.
It said some of these organisations are Care India, Snehalya Charitable Trust, Indian HIV/AIDS Alliance and All India Primary Teachers Federation and alleged that the representatives of some of these organisations were called and Joshi demanded and obtained illegal gratification.
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It further said when the CBI team had gone to his house, he not present there and even his mobile phone was switched off from May 11 to May 15 and he had left his house leaving a false letter behind.
Joshi was arrested yesterday after he allegedly gave unconvincing answers to the questions posed by a team of Special Crime division of the CBI, including those related to disappearance of files related to Sabrang Trust of activist Teesta Setalvad.
Joshi, who had disappeared on the morning of May 11 from his home in Indirapuram in Ghaziabad, was yesterday picked up from Tilak Nagar area of West Delhi and taken to the CBI headquarters for questioning.
seniors of pressuring him to give a clean chit to NGOs. In a note which he had left before leaving home, Joshi claimed he had been subjected to "mental harassment" in recent months.
CBI alleged in the court that Joshi laundered ill-gotten earnings in various immovable assets as well as certain private companies which were floated by him and his wife was one of the directors in them.
It alleged even after his transfer from FCRA division, he continued to indulge in corrupt activities on the basis of documents which were in his possession unauthorisedly.
The matter came to light after files pertaining to alleged FCRA violations by two NGOs run by Setalvad went missing from the Home Ministry. The files were traced and restored to the FCRA division but CBI was asked to investigate the matter.
Sabrang Trust's licence was suspended on September 9, 2015 by MHA for alleged multiple violations of FCRA rules, including misuse of funds for personal benefit of trustees.
When Home Ministry officials found that the files had gone missing, they conducted an inquiry and identified Joshi as the official who had taken away the files. He was summoned and the files were restored.
An Under Secretary is not allowed to take away files, only officials of the rank of Joint Secretary and above are allowed to take the files home. It is a serious violation, the CBI had said.