Senior police officials said that strict disciplinary action would be taken against SHO Bhagwan Singh if he is found guilty in the probe.
Reacting to the case, Delhi Chief Minster Sheila Dikshit said that police and the Delhi Lt Governor were seized of the matter.
However, police said that the initial probe had revealed several inconsistencies in the victim's statement before a female counsellor on September 14 and that given to senior police officials about the incident.
Neither had the victim told her anything about the SHO threatening her and asking her to strip, the counsellor said. She also expressed surprise as to why the complaint against the SHO was made 18 days after the incident.
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A senior Delhi police official said that the girl was allegedly raped on September 14 and an FIR was filed the same day. A juvenile girl and one Deepak were arrested the same day in connection with the case.
The victim said she wanted to file a complaint after being allegedly gangraped by four men on September 14.
Following her complaint, the SHO was sent to district lines and a departmental probe was initiated against him.