"Yes I have resigned as member of the General Council and have sent a letter to the President and Secretary of the Akademi this morning," Malagatti told PTI.
"I have resigned condemning the killing of Kalburgi and silence of Akademi over the issue. It should have spoken out and expressed its condemnation against such acts," he said.
77-year-old vocal and outspoken rationalist Kalburgi fell to the bullets of two unidentified men at his residence at Dharwad in north Karnataka, considered the state's cultural capital on August 30.
Malagatti is among 20 representatives from various Universities in the General Council of the Sahitya Akademi.
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He has worked in in varied forms of Kannada literature like poetry, prose, essays, criticism and folklore study. Karnataka government has bestowed the prestigious Ambedkar Fellowship Award to him considering his corpus of writing.
His 'Government Brahamana' being the first Dalit autobiography in Kannada has got the Karnataka Sahitya Akademi Award.
Recently literary figures like Shashi Deshpande, K Satchidanandan, P K Parakkadavu had resigned from their posts in the Akademi, citing similar reasons.
At the state-level, six Kannada writers had earlier this month returned their awards to Kannada Sahitya Parishat upset over the delay in arrest of Kalburgi's killers.
Yesterday, eminent Malayalam writer Sarah Joseph and Urdu novelist Rahman Abbas had announced they would return the Sahitya Akademi award and the Maharashtra State Urdu Sahitya Akademi award respectively, joining a growing protest against 'rising intolerance' in the backdrop of murder of noted rationalists and Dadri lynching incident.
The announcement had come on a day when Malayalam poet K Satchidanandan decided to quit all posts in the Akademi in protest against the murder of Kalburgi. Another Malayalam short story writer P K Parakkadavu had also said he would quit the Akademi membership.