The FIR was filed at Parliament Street police station on the charges of rioting, preventing public servants from performing their duty, damaging public properties, and causing hurt.
Several people from both sides were arrested in this connection, a senior police officer said.
As many as 28 persons -- 13 AAP activists, 10 BJP supporters, four policemen and a mediaperson -- were injured in the clashes, the officer added.
AAP workers clashed with BJP activists outside the saffron party headquarters here hours after former Chief Minister Arvind Kejriwal was detained briefly in Gujarat.