The National Weather Service yesterday said heavy rain could persist into the evening and was expected to cause flooding on the Carmel River in Monterey County and Coyote Creek in Santa Clara County.
In the San Joaquin Valley, residents were patrolling levees for signs of danger, reviewing evacuation plans and filling hundreds of sand bags as the San Joaquin River kept rising.
"Our community is pulling together like real champs," said San Joaquin River Club resident Paula Martin, who is helping coordinate emergency plans for the private neighbourhood of 800 homes.
The weather service also issued snow and wind advisories, including a flash flood warning for the Soberanes burn area in Monterey County. It said winds could reach 60 mph in the San Francisco Bay Area.
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Santa Cruz County had seen 2.8 inches of rain in 24 hours and could see up to 8 inches before the storm passes Tuesday. Marin County got 2.3 inches of rain while close to an inch fell in San Francisco.
Forecasters said rainfall in San Francisco has already surpassed the normal annual amount for the wet season that begins in October.
In the mountains, the weather service forecast heavy snow in the Lake Tahoe area with a high avalanche danger until Tuesday in an area of the Sierra Nevada from Yuba Pass to Ebbetts Pass.
Forecasters say the winter storm could drop up to 5 feet of snow in areas above 7,500 feet while lower elevations could see between 8 and 24 inches of snow.
Forecasters advised motorists to avoid travel in the area through Tuesday.
The San Joaquin River was approaching the top of levees and could remain at that level for four days, said Tim Daly, a spokesman with the San Joaquin County Office of Emergency Services.