"Decoding the tsetse fly's DNA is a major scientific breakthrough," said Kostas Bourtzis from a joint body of the United Nations (UN) Food and Agriculture Organisation and the International Atomic Energy Agency which sequenced the genome in a 10-year international effort.
He said it "opens the way for more effective control of trypanosomiasis, which is good news for millions of herders and farmers in sub-Saharan Africa".
Found only in Africa, bloodsucking tsetse flies are vectors for the parasites that cause trypanosomiasis, or nagana, an often-lethal disease that affects some three million animals each year.
Humans bitten by carrier flies can develop African sleeping sickness, which can be fatal without treatment.
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No vaccine exists for livestock or humans because the parasite is able to evade mammals' immune systems, so control methods primarily involve trapping, pesticides and sterilising male flies using radiation.
The sequencing of the genome will allow scientists to study the fly's genes and their functions better, a knowledge that should open the door for researching ways to control the insect, Bourtzis said in a statement.
"But this new knowledge will accelerate research on tsetse control methods and help scientists develop new and complementary strategies to reduce the use of costly drugs and insecticides," he added.
The Food and Agriculture Organisation (FAO) and International Atomic Energy Agency (IAEA's) Division of Nuclear Techniques in Food and Agriculture is currently helping 14 African countries to control tsetse populations using sterilisation and other methods, with the fly already eradicated on the island of Zanzibar and progress being made in Ethiopia and Senegal.