Vijayan said the government's "displeasure" has already been conveyed to the Idukki district administration.
"The steps taken by the district administration has resulted in some misunderstanding. A cross which was there was destroyed as part of an anti-encroachment drive," Vijayan said at a function in Kottayam tonight.
The government viewed the matter "very seriously," he said.
The cross, set up under the garb of 'spiritual tourism' atop a hilly area, was brought down with the help of earth movers this morning, the officials said.
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Besides the cross, some thatched sheds and a prayer hall too were also demolished, they added.
Prohibitory orders were clamped in the area before the officials began dismantling the cross.
Road blocks were created by some people by leaving cars on the narrow road leading to the location of the cross.
The ruling CPI-M Idukki district secretary K K Jayachandran expressed unhappiness over the removal of the cross and criticised the district collector and Devikulam sub-collector for taking the action.
KPCC President M M Hassan welcomed the action, saying all encroachments needed to be removed.
The local Congress leadership, however, opined that the cross should not have been removed first while there were other encroachments nearby.
Munnar, situated about 1600 metres above the sea level, was once the summer resort of the erstwhile British government in South India.
Sprawling tea plantations, picture-book towns, winding lanes and holiday facilities make Munnar a favourite town for the tourists.
It has of late become a hunting ground for encroachers as well.
Meanwhile, an expert committee of environmentalists and social activists set up by BJP in Kerala has warned of serious consequences if encroachments were not stopped in ecologically sensitive Munnar.
Munnar was turning into a graveyard due to construction of resorts on alleged encroached government lands, committee members said after visiting the tourist spot.
The committee said authorities should be vigilant to put a stop to "use of religious symbols" for encroachments.
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