After the match ended goalless, the Goa side won on penalties with Clive Miranda, Kunal Kundaikar, Snedden Rodrigues, Clifton Fernandes and Sehubert D'Costa scoring.
Sriram, Akash, Karthick and Rajeev Kottan found the back of the net for Customs.
Chennai FC takes on Cannanore Spirited Youths Club in tomorrow's match.
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