At the same time, Gandhi said that the vote he secured were an affirmation of "the right to free thought and speech".
Thanking the MPs and the parties that backed him in the election, he said they voted for what they felt was "national good". He said the number of votes he received was "beyond expectation".
The former West Bengal governor said that the MPs voted for him to affirm "the right to free thought and speech and the duty to serve pluralism and secularism".
"Secondly, I would like to thank all the members of the Parliament for having voted for me. I believe members who voted for me is beyond expectations or calculations," Gandhi told reporters after the poll result was out.
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The former West Bengal governor and diplomat also stressed that the election saw two victories - one of Naidu and another of free speech.
"And the second victory belongs to all the people of India," he added.
Although 785 MPs are there in both the Houses of Parliament, 14 MPs could not vote.