Dr Kafeel Khan was hailed as a hero after he reportedly bought oxygen cylinders with his own money when its shortage led to a crisis last week at the state-run hospital. However, hours after Uttar Pradesh Chief Minister Yogi Adityanath visited the hospital, Khan was removed as the nodal officer.
Efforts by media to get in touch with him proved futile. Officials at the hospital said he has proceeded on leave.
Many of the children were claimed to have died in the hospital's neo-natal intensive care unit for want of oxygen.
The government, however, has been insisting Japanese encyphalitis was a major cause of the tragedy. Gorakhpur and areas surrounding it are prone to the disease which has claimed hundreds of lives over the past two decades.
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He was also a member of the purchase committee of the medical college and had complete information about pending dues of the Lucknow-based company that supplied oxygen cylinders to the medical college, the source claimed.
Hours after the tragedy struck, Khan had said, "All the doctors were on the job for the past few days. We walked the extra mile. Some people are running a smear campaign on the social media because I am a Muslim.... They should not do so. I want to clarify that I am an Indian first, and I have done everythig as a doctor."
The association has written an open letter condemning Khan's removal and has also accused the Uttar Pradesh government of "gross neglect of public health".
"If oxygen, gloves, surgical instruments and basic medicines are not available in the hospital, then who is responsible? According to the government, the doctor is responsible.
"I request politicians not to spoil this relationship between the patient and the doctor to hide their incompetency," Bhatti said in the letter.
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