In a circular, the ministry said all NGOs which were registered under the Foreign Contribution Regulation Act (FCRA) should receive donations from abroad in a single designated bank account.
However, it is seen that a number of such organisations have not validated their foreign contribution designated accounts, causing problems for the banks to comply with the FCRA provisions that they (banks) report to the Central government within 48 hours of such receipt or utilisation of foreign contribution.
The ministry also announced a list of 2,025 NGOs which have not yet validated their FCRA designated accounts.
The Modi government, which has tightened the rules for NGOs, has already cancelled registration of more than 10,000 non-governmental organisations in the last three years for alleged non-filing of annual returns as mandated in the FCRA.
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In addition, renewals of more than 1,300 NGOs have been denied or closed in recent past for allegedly violating various provisions of the FCRA.
The move was initiated after it was detected that many NGOs have their bank accounts in cooperative banks or state government-owned apex banks or banks which do not have core banking facilities.
The home ministry recently had cancelled registration of 10,256 NGOs which failed to file their annual income and expenditure records.
In November, 2016, the government had directed more than 11,000 NGOs to file applications for renewal of registration by February 28, 2017.