"I always respect Banerjee. She is a fighter. She has brought a big change in Bengal by ending the CPI(M) rule. We have worked together. By making such allegations against the government of India, she is helping the accused. She should instead purge such people," he told reporters here.
Naidu insisted that the government has no role in the ongoing investigation into the Saradha chit fund scam, which is being handled by CBI, and the NIA-led probe into the Burdwan blast.
"We work for the people. No conspiracy can thwart us. Whole party (Trinamool Congress) is being blamed for the fault of one or two outsiders," she had said in Kolkata, adding that she will take her fight to Delhi.
Meanwhile, at a Congress briefing, party spokesperson Abhishek Singhvi steered cleared of the issue, saying his party does not react on matters which are sub-judice.
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"If found to be true, it is liable to be deprecated and we will speak out against it," Singhvi said.
Another Congress leader said the party was keenly watching the developments in Bengal amid apprehensions.
Banerjee has alleged that she was being victimised because she had last week attended an international conference on Jawaharlal Nehru organised by Congress in the national capital.
Banerjee has accused the NDA government of carrying out a "selective vendetta" against herself and TMC and dared the Centre to arrest her and impose President's rule in Bengal. Her outburst followed the arrest of TMC MP Srinjay Bose in connection with the Saradha scam.