The Department of Consumer Affairs had filed a suit against Nestle India in August seeking damages for alleged unfair trade practices, false labeling and misleading advertisements.
Before that Maggi was banned by Food Safety and Standards Authority of India (FSSAI) alleging it was "unsafe and hazardous" for consumption due to excess presence of lead.
"The case will continue. We will pursue the case against Nestle India in NCDRC," a top ranking official in the ministry said when asked whether the department will withdraw the case.
This is for the first time that a company was dragged to NCDRC using a provision in the three-decade old Consumer Protection Act.
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According to the complaint filed by the government, Nestle India was allegedly involved in unfair trade practices and false labeling related to the Maggi noodles product.
The court, however, asked the company to go for fresh tests of the products in government accredited laboratories.
Earlier this month, Nestle relaunched its instant noodles Maggi in the country after satisfying the conditions laid down by the High Court.