However, cigarette prices will not change as a result of the increased cess which would be effective from midnight tonight.
This was the first meeting of the Council after the Goods and Services Tax (GST) was rolled out on July 1.
Briefing reporters after an emergency meeting of the Council was held through video conferencing, Jaitley said it had previously fixed a peak GST rate of 28 per cent on cigarettes.
The cess was made up of 5 per cent ad valorem rate and a fixed per thousand stick rate based on length of cigarettes.
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The peak GST rate of 28 per cent as also the 5 per cent ad valorem cess will continue but the fixed cess has been hiked in the range of Rs 485 and 792 per thousand sticks, he said.
The hike has been necessitated as the GST rate together with cess was found to be lower than the combined incidence of central excise, state VAT and other levies put together.
The cess which was earlier fixed by the GST Council had resulted in a windfall profit for cigarette companies.
"There were two things that the cigarette companies could do -- either reduce the price of cigarette, which because of the health consequences of cigarettes is not a very desirable thing. So they probably would have resorted to the other option of transferring this windfall profits to their balance sheet. This was not the intention of the Council," he said.
The new cess rate for non-filter and filter cigarettes of length not exceeding 65 mm would be 5 per cent plus Rs 2,076 per thousand sticks. For non-filter cigarettes of 65 mm to 70 mm length, the rate would be 5 per cent plus Rs 3,668 per thousand sticks as against 5 per cent plus Rs 2,876 currently.
For other cigarettes, the cess would be 36 per cent plus Rs 4,170 per thousand sticks as compared to 5 per cent plus Rs 4,170 currently.
Jaitley said the rates fixed in May were lower than the pre-GST tax incidence and the choice before manufacturers was either to pass on the lower taxes to consumer by way of cutting rates or pocketing the windfall.
Jaitley said to correct the anomaly, the GST Council has raised the fixed cess by Rs 485 to 792 per thousand sticks.
Consumer prices will, however, not change as the increased tax incidence would only take away the windfall profits the manufacturers were earning, the finance minister said.
Jaitley also said the GST Council will meet in first week of August to review the progress of the implementation of GST, which was rolled out on July 1.
"This figure is almost multiplying everyday. From this it comfortably looks like that the original number of applicants which included duplication... Which was 80 lakh, I think we are almost on the verge of crossing that figure. This itself indicates an expansion of tax base," Jaitley said.
So far, the functioning has been fairly smooth and both the Centre and state governments are responding to all the queries which are being raised. The GSTN portal is able to comfortably take this load, he added.
"In a large number of products we have seen that input credit helps in bringing down the cost," he said.
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