A bench of Justices Ranjit More and Anuja Prabhudessai allowed an application filed by the government seeking to transfer the investigations from five different police stations to CID.
The Judges also directed the clubbing of all the five FIRs lodged against the Editor and asked CID to complete the probe.
46-year-old Dalvi, a resident of Mumbra in nearby Thane district, has sought quashing of the cases against her and also clubbing together of all cases filed against her following the publication of the cartoon, while she prayed for a direction to prevent the government and police from taking coercive action against her, including arrest.
The newspaper had reproduced the cartoon published by French Satirical magazine 'Charlie Hebdo', the target of an attack by Islamist militants last month.
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The Editor pleaded that she was the only woman Editor of an Urdu daily newspaper in India and that due to the events following publication of the Prophet's cartoon she is facing threats of physical attacks. Several FIRs have been filed against her and she also had to abondon her home.
Dalvi further said that her children had to discontinue their education and were compelled to go incognito along with their mother out of fear of physical harm.