A bench of justices G S Sistani and Chander Shekhar said as a large number of inmates were to be medically examined, they should be taken to three city hospitals -- AIIMS, Safdarjung and LNJP.
It also questioned the jail authorities on the non- functioning of CCTV cameras near the place of the alleged incident.
The bench asked the Tihar's Director General (Prison) to give details on "when it was detected that the CCTV cameras were not working? If they were not working, since when? Whether any complaint for repair was made? If yes, then when?"
The court was informed by Delhi Police that on September 14, an FIR has been lodged at Hari Nagar Police Station here alleging that the prisoners belonging to two groups were involved in a scuffle.
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The FIR said some prisoners allegedly attacked jail officials and obstructed them from performing their duties, after which "minimum force" was used on the alleged violators.
The matter reached the high court when the counsel for an undertrial, Jamal, who was lodged in Tihar jail number 3 and facing trial in 11 cases, claimed that his client was not being produced in the lower court despite a direction.
Advocate Mehmood Pracha, who was arguing for Jamal, alleged that the undertrial was "mercilessly beaten" and no medical aid was provided to them, leading to the violation of their human rights.
He also said that Jamal was suffering from a head injury after which the court directed that the undertrial be examined by any government hospital, apart from DDU hospital, which had a neurology department.
On September 13, he inflicted injury to himself at the control room, it claimed while denying that the accused was beaten up.