The society had approached the high court after its plea for defreezing of the bank accounts was turned down by a special CBI court in September 2015.
The CBI had in January 2011 froze two bank accounts of the society after registering a case against 14 accused, including several members of the society.
According to the society, the amount - totalling Rs 1.47 crore - lying in the two accounts had nothing to do with the purported scam.
CBI counsel Hiten Venegaonkar opposed the petition and said the amount could be part of benami transactions and hence, be proceeds of crime.
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Justice Anil Menon today accepted the CBI's contention.
"There is no merit in the petition. The society has been allowed by the Supreme Court in the past to open a fresh account," Justice Menon said dismissing the petition.
The plush 31-storey building at Colaba in south Mumbai is embroiled in a controversy since 2011 with the Union Ministry of Environment and Forest ordering for its demolition for violating environmental norms and the Defence Ministry claiming ownership of the land where it is constructed.