The state has moved the high court in appeal against the order of sessions court discharging the eight accused, all Muslims.
In April, the sessions court here discharged these men of all terror charges after the National Investigation Agency submitted that the blasts were the handiwork of a Hindu extremist group.
The state government, however, urged the high court to set aside the order.
In its appeal, the government said the sessions court's order was illegal and unjust, and was contrary to the evidence on record.
The state claimed the trial court's conclusion that Muslims would not plant bombs inside a mosque was wrong and had no legal basis.
The serial bomb blasts outside a cemetery near Hamidia mosque at Malegaon, near Nashik, on September 8, 2006, claimed 37 lives and injured over 100 people.