FDA had ordered shut down of the plant for not treating a batch of talcum powder for ethylene oxide residue in 2007.
The division bench of Justices S J Vazifdar and K R Shriram was hearing a petition filed by Johnson and Johnson challenging the June 24 order of FDA appellate authority.
While allowing resumption of production, court today referred the matter back to the appellate authority for a reconsideration, saying that "the proportionality (of the punishment vis a vis the offence) issue needs to be seen".
FDA alleged that the company did not register the process with it, and failed to conduct tests for traces of ethylene oxide in the powder.
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The company challenged the order, but in June the cancellation of license was upheld by the FDA's appellate authority.
Senior counsel Rafiq Dada, appearing for the company, said the company was not using ethylene oxide treatment process anymore.