The protest was led by Birsa Ambedkar Phule Students' Association (BAPSA) and joined by representatives of JNU student bodies related to AISF, AISA and DSF among others.
Students and teachers from Delhi University also participated in the protest.
"The government systematically planned this whole thing to arrest students and divert the public attention from Rohith Vemula's case," DU professor Keshav Kumar said.
Rahul, a BAPSA member questioned Telangana Chief Minister K C Rao's "silence" on Rohith's case.
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DU Professor Sukumar condemned the police action on the students terming it as "unprecedented".
The protesters also demanded the enactment of "Rohith Act" to end caste-based discrimination in educational institutions and the release of Hyderabad University professors Tathagata Sengupta, Konda Yesu Ratnam among others.
Another Delhi University professor echoed the same sentiments stating "Brahiminical forces are frustrated" since students from vulnerable communities are questioning the system and its atrocities.
25 students and two faculty members of Hyderabad Central University were arrested in connection with incidents of vandalism at the VC's lodge and stone pelting on police personnel on March 22.