Resham Bagan, Kalikapur, Jaipur of the district and most part of the Agartala Municipal Corporation (AMC) were waterlogged due to heavy rain for the last three days.
Water of Haura, the main river of the capital city, is flowing much above the danger level Sub-divisional Magistrate of Sadar, M L Das, told reporters.
Due to flowing of water over the Assam-Agartala National Highway at Kashipur and Resham Bagan, vehicular movement was disrupted.
Officials said a crack developed in the embankment of the river Haura at Jaipur near here last night which was repaired.
The Met office said, 1040 mm rain was recorded since June 1 to till date.