Residential demand remained subdued despite massive price corrections in Delhi, Noida and Gurgaon, the report said.
An inventory overhang of over 2,50,000 unsold flats continued denting developer sentiments, 99acres said, adding that over 30 per cent of the inventory is under-construction due to litigation and clearance troubles.
"The numerous government policies and infrastructure enhancements are yet to make a mark on Delhi NCR's property landscape," said Narasimha Jayakumar, Chief Business Officer, 99acres.
"Delhi's real estate story continued its paradoxical trajectory, with prices remaining stubbornly high despite towering unsold inventory," the portal said in a statement.
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The report said that builder floors enjoyed higher popularity than society apartments in Delhi, thus recording a stable market in Apr-Jun 2016.
In Noida and Greater Noida, apartment prices dipped by 1 per cent during the period under review.
"Soaring inventory, stalled infrastructure projects, and frequent legal tussles faced by developers in Noida and Greater Noida continued hurting market sentiments," it said.
Only 20 per cent of the tracked localities in Gurgaon reported growth on the capital charts.
99acres Insite is a quarterly report which captures the capital and rental price trends of the residential realty market across seven major cities of India.