Technical objections to the idea that Neanderthals interbred with the ancestors of Eurasians have been overcome, thanks to a new genome analysis method.
The technique can more confidently detect the genetic signatures of interbreeding than previous approaches and will be useful for evolutionary studies of other ancient or rare DNA samples.
"Our approach can distinguish between two subtly different scenarios that could explain the genetic similarities shared by Neanderthals and modern humans from Europe and Asia," said study co-author Konrad Lohse, a population geneticist at the University of Edinburgh.
The alternative scenario is that the humans who left Africa evolved from the same ancestral subpopulation that had previously given rise to the Neanderthals.
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The new approach completely rules out the alternative scenario without requiring all the extra data, by using only the information from one genome each of several types: Neanderthal, European/Asian, African and chimpanzee.
The same method will be useful in other studies of interbreeding where limited samples are available.
Lohse cautions against reading too much into the fact that the new method estimates a slightly higher genetic contribution of Neanderthals to modern humans than previous studies.
Estimating this contribution is complex and is likely to vary slightly between different approaches.
The finding is described in the journal Genetics.