Besides managing the U-19 team, 34-year-old Johnson will also act as the head scout for the national side and will also perform the role of assistant coach of the senior team.
"Lee's (Johnson) presence will immensely boost player development programme in India," said India's national team chief coach Stephen Constantine.
"Lee brings a whole lot of valuable commodities with him. What we require is a full understanding of how young players need to learn. Lee has been fortunate enough to work for two big clubs in England and has also had the opportunity to witness top football coaches in action," he said.
Talking about his new assignment, looking for young talented footballers in the country,
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Johnson said: "In such a big country you need to find them in order to further enhance the national team squads. I will be travelling to Hero I-League matches and also youth games to identify potential players for the future."
Before taking up the India job, Johnson was working as the technical director of the Football Federation of Rwanda where he was also the head coach of the U-17 national team.
Johnson was also an FA Learning Tutor for The Football Association besides being the academy coach at Crystal Palace Football Club and Chelsea Football Club.
Johnson, who was in Pune to watch the U-19 I-League, will be based in Goa.