India opened the scoring in the 25th minute through Daniel Lalamphuia who scored in the previous encounter as well.
However, by the end of the first half, UAE clawed their way back into the game scoring two goals.
India reduced the deficit from the spot through Alen Deroy.
In spite of the colts' spirited performance, the visitors could not find the equaliser.
India have been clubbed in Group D with Uzbekistan, Syria and China in the final phase. India play Uzbekistan in their first match on September 23.