A battery of special forces, including Naval commandos Marcos and Explosive Ordnance Disposal Team, will also be deployed.
India is deploying a Russian-origin submarine besides a R-Class destroyer, one Shivalik Class frigate, one tanker, one Betwa guided missile frigate, a P8i maritime surveillance aircraft and two different types of helicopters.
The exercise, to be held from October 12-19, will see US' Nimitz-class 100,000-tonne carrier, the USS Theodore Roosevelt which answers to the radio call sign "Rough Rider" in action.
Japan is sending one of its latest Akizuki-class destroyer equipped with a heavy helicopter.
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'Malabar' is an annual naval training exercise conducted by Indian and American Navies, which includes fighter combat operations from aircraft carriers and other maneuvers.
Japan had last taken part in the Malabar hosted by India in 2007. However, a strong reaction from China against the inclusion of Japan and Australia in 2007 led to the exercises being largely kept bilateral.