The amount was deducted from the university's account at the University branch of State Bank of India on September 8, with the varsity officials claiming that this was done without any prior information to them.
No income tax is imposed on leave encashment of retired employees in any other central university, including Banaras Hindu University, AMU spokesman Rahat Abrar said.
SBI authorities deducted the above amount without informing the university authorities, he claimed.
The spokesman said that it was difficult to find logic in IT department's decision in "singling out" the university for levying the tax.
"The entire matter will be reviewed at the meeting of the University's Executive Council which is being held on September 19," he said.