Ishfaq Ahmad, who plays for Mohun Bagan in the I-League, scored the only goal of the match in the 50th minute to give the victory for the home side.
The match was played at Showkat Ali Stadium in Baramulla town of north Kashmir in front of over 15,000 spectators.
The hosts had defeated Mohammedan Sporting in the first match in a penalty shootout at packed Bakshi Stadium here on Sunday.